Universität Bern Institute of Ecology and Evolution Search|Contact|Impressum
Population Genetics
Home>Department of Biology>Institute of Ecology and Evolution>Population Genetics

 Aquatic Ecology
 Behavioural Ecology
 Community Ecology
 Conservation Biology
 Evolutionary Ecology
 Population Genetics
 


  [Webmaster: isabelle.duperret@iee.unibe.ch] Webmaster
Software Author(s) Description
ARLEQUIN 2.0 Stephan Schneider, David Roessli and Laurent Excoffier A software for population genetics data analysis
ARLEQUIN 3.1 Laurent Excoffier, Guillaume Laval and Stephan Schneider An integrated software package for population genetics data analysis
SIMCOAL Laurent Excoffier A general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography
SIMCOAL2 Guillaume Laval and Laurent Excoffier A general coalescent program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history.
SPLATCHE Mathias Currat, Nicolas Ray and Laurent Excoffier A program to simulate genetic diversity taking into account environmental heterogeneity
AQUASPLATCHE Samuel Neuenschwander A program to simulate genetic diversity based on a realistic vectorized environment
LAPD Laurent Excoffier and Monty Slatkin This program allows to estimate maximum likelihood allele and two-locus haplotype frequencies, using an Expectation-Maximization algorithm, taking into account family relationships of the individuals.
MINSPNET Laurent Excoffier It computes a minimum spanning network among a set of OTUs.
PATHMATRIX Nicolas Ray PATHMATRIX is an extension to the GIS software ArcView 3.x. It computes matrices of effective distances, based on a least-cost path algorithm, among a set of sample locations (points) or zones (polygons).
SAMOVA Isabelle Dupanloup Duperret The program SAMOVA 1.0 implements an approach to define groups of populations that are geographically homogeneous and maximally differentiated from each other.
ADMIX Isabelle Dupanloup Duperret and Giorgio Bertorelle Computing admixture coefficients from molecular data