//Input parameters for the coalescence simulation program : simcoal.exe
3 samples to simulate
//Deme sizes (haploid number of genes)
10000
50000
10000
//Sample sizes
20
30
10
//Growth rates
0
0
0
//Number of migration matrices : If 0 : No migration between demes
2
//Migration rates matrix 0 : A linear stepping-stone model
0.000 0.005 0.000
0.005 0.000 0.005
0.000 0.005 0.000
//Migration rates matrix 1 : No migrations
0 0 0
0 0 0
0 0 0
//Historical event: time, source, sink, migrants, new deme size, new growth rate, new migration matrix
2 historical events
100000 0 1 1 1 0 1
100000 1 2 1 1 0 1
//Mutation rate per generation for the whole sequence
0.0005
//Number of loci
300
//Data type : either DNA, RFLP, or MICROSAT : If DNA, second term is the transition bias
DNA 0.9090909
//Mutation rates gamma distribution shape parameter
0.4 10