//Parameters for the coalescence simulation program : simcoal.exe 4 samples to simulate //Population effective sizes (number of genes) 10000 10000 10000 10000 //Samples sizes 10 10 10 10 //Growth rates : negative growth implies population expansion 0 0 0 0 //Number of migration matrices : If 0 : No migration is assumed between populations 2 //Migration rates matrix 0 0 0.0005 0.0005 0.0005 0.0005 0 0.0005 0.0005 0.0005 0.0005 0 0.0005 0.0005 0.0005 0.0005 0 //Migration rates matrix 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 //historical event: time, source, sink, migrants, new deme size, new growth rate, new migration matrix 3 historical events 10000 0 1 1 1 0 1 10000 2 3 1 1 0 1 100000 1 3 1 1 0 1 //Mutation rate per generation for the whole sequence 0.0005 //Number of loci 300 //data type either DNA, RFLP, or MICROSAT : If DNA second term is the transition bias DNA 0.9090909 //Gamma parameter (if 0: even mutation rates 0 //Even mutation rates