//Parameters for the coalescence simulation program : simcoal.exe 2 samples to simulate //Population effective sizes (number of genes) 10000 10000 //Samples sizes 20 20 //Growth rates : negative growth implies population expansion 0 0 //Number of migration matrices : 0 implies no migration between demes 0 //historical event: time, source, sink, migrants, new deme size, new growth rate, migration matrix index 1 historical event 5000 0 1 1 1 0 0 //Mutation rate per generation for the whole sequence 0.005 //Number of nucleotides to simulate 300 //data type either DNA, RFLP, or MICROSAT : If DNA, we need a second term for the transition bias DNA 0.952381 //Gamma parameter (if 0: even mutation rates, if >0 :shape parameter of the Gamma distribution 0.39 8 // Second parameter is the number of discrete rate categories to simulate: if zero: continuous distribution