//Parameters for the coalescence simulation program : simcoal.exe 1 samples to simulate : Exponential growth : 1000 to 100,000,000 started 3000 generations ago //Population effective sizes (number of genes 2*diploids) 500 //Samples sizes (number of genes 2*diploids) 50 //Growth rates : negative growth implies population expansion 0 //Number of migration matrices : 0 implies no migration between demes 0 //historical event: time, source, sink, migrants, new deme size, new growth rate, migration matrix index 0 historical event //Stop growth //Number of independent loci [chromosome] (Number of sequences of 300 bp per gamete) 2 //Per chromosome: Number of contiguous linkage Block: a block is a set of contiguous loci 4 //per Block:data type, number of loci, per generation recombination and mutation rates and optional parameters SNP 5 0.0005 0.00000 DNA 5 0.0005 0.00025 0.3333 MICROSAT 5 0.0005 0.00250 0 RFLP 5 0.0005 0.00025